Usage
To use the GUI version:
python NCBI_downloader.py
To use the command line version:
python NCBI_downloader.py -q "Query term" -d "database" -o outfile.fasta
Notes
- The program will not overwrite anything in the output file, but rather append sequences to it;s
- If you do not want this behavior, please use an empty file as output.
- On the top left of the GUI there is a link to documentation on how to perform a query to the Entrez services.
- You may use NCBI Mass Seqence Downloader to access any of these databases: "nucleotide", "nuccore", "nucgss", "nucest", "protein", "genome" and "popset".
- Query term can take any argument just like in the Entrez website search engine (eg. "Lacerta monticola[organism]");